GgaEX1030798 @ galGal3
Exon Skipping
Gene
ENSGALG00000011141 | E1C6K8_CHICK
Description
NA
Coordinates
chr7:23400180-23405927:+
Coord C1 exon
chr7:23400180-23400402
Coord A exon
chr7:23402594-23402691
Coord C2 exon
chr7:23405808-23405927
Length
98 bp
Sequences
Splice sites
3' ss Seq
TGCTGAATTATTTTCCACAGGAG
3' ss Score
7.63
5' ss Seq
AGGGTTTGT
5' ss Score
3.38
Exon sequences
Seq C1 exon
GCAATGGAGACTGTGACTGTGGTGAATGCGTGTGCCACAGTGGATGGACTGGTGAATACTGTAATTGCACAACTGACACCAACTCCTGCATTTCTGAGGATGGAACGCTGTGCAGTGGGAGAGGCGAATGCATCTGCGGGTCGTGTGTATGCATACATCCAGGGGCTTCAGGCCAAACCTGTGAAAAATGCCCTCTGTGTGGTGACCCTTGCAGTTCCAGACG
Seq A exon
GAGCTGTGTGGAGTGTCATTTGGCTTCTGATGACAAGCTGCAGGGAGAATGCAGTGAAAAATGCAAATCAGTTGATGCAACTGTCAGCACTGCAGAGG
Seq C2 exon
ATTTTTTGGAGGATAAATCCATTCCTTGCTCTTTTCAGGCGGAAAACGAATGTATAACCACTTTTCTTCTGGCTGTGGATGAGCAGGGAAGGACAGTCATCCACAGCATAAAGCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011141-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=PD(64.5=26.7),PF079657=Integrin_B_tail=PU(4.8=5.3)
A:
PF079657=Integrin_B_tail=FE(39.3=100),PF111883=DUF2975=PU(7.3=20.6)
C2:
PF079657=Integrin_B_tail=FE(47.6=100),PF111883=DUF2975=FE(41.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATACATCCAGGGGCTTCAG
R:
TGACTGTCCTTCCCTGCTCAT
Band lengths:
172-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]