GgaEX1030798 @ galGal4
Exon Skipping
Gene
ENSGALG00000011141 | ITGB6
Description
integrin, beta 6 [Source:HGNC Symbol;Acc:HGNC:6161]
Coordinates
chr7:21311606-21317353:+
Coord C1 exon
chr7:21311606-21311828
Coord A exon
chr7:21314020-21314117
Coord C2 exon
chr7:21317234-21317353
Length
98 bp
Sequences
Splice sites
3' ss Seq
TGCTGAATTATTTTCCACAGGAG
3' ss Score
7.63
5' ss Seq
AGGGTTTGT
5' ss Score
3.38
Exon sequences
Seq C1 exon
GCAATGGAGACTGTGACTGTGGTGAATGCGTGTGCCACAGTGGATGGACTGGTGAATACTGTAATTGCACAACTGACACCAACTCCTGCATTTCTGAGGATGGAACGCTGTGCAGTGGGAGAGGCGAATGCATCTGCGGGTCGTGTGTATGCATACATCCAGGGGCTTCAGGCCAAACCTGTGAAAAATGCCCTCTGTGTGGTGACCCTTGCAGTTCCAGACG
Seq A exon
GAGCTGTGTGGAGTGTCATTTGGCTTCTGATGACAAGCTGCAGGGAGAATGCAGTGAAAAATGCAAATCAGTTGATGCAACTGTCAGCACTGCAGAGG
Seq C2 exon
ATTTTTTGGAGGATAAATCCATTCCTTGCTCTTTTCAGGCGGAAAACGAATGTATAACCACTTTTCTTCTGGCTGTGGATGAGCAGGGAAGGACAGTCATCCACAGCATAAAGCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011141-'12-14,'12-13,15-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=PD(64.5=26.7),PF079657=Integrin_B_tail=PU(4.8=5.3)
A:
PF079657=Integrin_B_tail=FE(39.3=100)
C2:
PF079657=Integrin_B_tail=FE(47.6=100)
Main Skipping Isoform:
ENSGALT00000018170fB8532
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATACATCCAGGGGCTTCAG
R:
TGACTGTCCTTCCCTGCTCAT
Band lengths:
172-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]