BtaEX0018897 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016729 | KCNT2
Description
potassium channel, sodium activated subfamily T, member 2 [Source:HGNC Symbol;Acc:HGNC:18866]
Coordinates
chr16:6484970-6542585:+
Coord C1 exon
chr16:6484970-6485078
Coord A exon
chr16:6522399-6522507
Coord C2 exon
chr16:6542436-6542585
Length
109 bp
Sequences
Splice sites
3' ss Seq
ACCTATTTTATTTCAAACAGATC
3' ss Score
9.18
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
Exon sequences
Seq C1 exon
GATCACCAAACAATTTTAAGAGCATGGGCTGTAAAAGATTTTGCTCCAAATTGCCCTTTGTATGTCCAGATCTTAAAGCCTGAAAATAAATTCCATATCAAATTTGCTG
Seq A exon
ATCATGTTGTTTGTGAAGAAGAGTTTAAATACGCCATGTTAGCTTTAAACTGTATATGCCCAGCAACATCTACACTTATTACACTACTGGTTCATACCTCTAGAGGGCA
Seq C2 exon
AGAAGGCCAGCAGTCGCCAGAACAGTGGCAGAAGATGTACGGCAGATGCTCTGGGAATGAAGTGTACCACATTGTTCTGGAAGAAAGCACATTTTTTGCTGAATATGAAGGAAAGAGCTTCACATATGCTTCTTTCCATGCACACAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016729-'15-17,'15-16,16-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.059
Domain overlap (PFAM):
C1:
PF0349313=BK_channel_a=PU(9.4=27.0)
A:
PF0349313=BK_channel_a=FE(34.0=100)
C2:
PF0349313=BK_channel_a=FE(47.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAAACAATTTTAAGAGCATGGGC
R:
TTGTGTGCATGGAAAGAAGCA
Band lengths:
252-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development