GgaEX6043519 @ galGal3
Exon Skipping
Gene
ENSGALG00000002451 | KCNT2
Description
NA
Coordinates
chr8:2785172-2791062:+
Coord C1 exon
chr8:2785172-2785280
Coord A exon
chr8:2788230-2788338
Coord C2 exon
chr8:2790913-2791062
Length
109 bp
Sequences
Splice sites
3' ss Seq
TATATTGTTTTTTTCCACAGATC
3' ss Score
11.82
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GATCATCAAACCATTTTAAGAGCATGGGCTGTTAAAGACTTTGCCCCAAATTGTCCTTTGTATGTCCAAATACTGAAACCTGAGAATAAATTCCACATCAAGTTTGCAG
Seq A exon
ATCATGTTGTGTGTGAAGAAGAATTCAAATATGCTATGCTAGCTCTAAACTGTATATGTCCAGCTACCTCTACATTAATCACACTGCTGGTTCATACCTCCAGGGGACA
Seq C2 exon
AGAGAGTCAGCAATCATCAGAACAATGGCAGAAAATGTATGGCAGATGCTCTGGTAATGAAGTGTTTCACATTAACCTGGAAGAAAGTACTTTTTTTGCTGAATATGAAGGGAAAAGCTTCACATATGCTTCTTTCCATGCACATAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002451-'16-20,'16-18,17-20=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF0349313=BK_channel_a=PU(9.4=27.0)
A:
PF0349313=BK_channel_a=FE(34.0=100)
C2:
PF0349313=BK_channel_a=FE(47.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAACCATTTTAAGAGCATGGGC
R:
TGTGCATGGAAAGAAGCATATGTG
Band lengths:
248-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]