DreEX0041033 @ danRer10
Exon Skipping
Gene
ENSDARG00000079484 | kcnt1
Description
potassium channel, subfamily T, member 1 [Source:ZFIN;Acc:ZDB-GENE-091231-1]
Coordinates
chr21:4737526-4740059:-
Coord C1 exon
chr21:4739951-4740059
Coord A exon
chr21:4738782-4738890
Coord C2 exon
chr21:4737526-4737675
Length
109 bp
Sequences
Splice sites
3' ss Seq
ATGTCTGTTTCTTCCTGCAGATC
3' ss Score
13.31
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GATCACCAGACCATTCTGAGGGCTTGGGCTGTGAAAGACTTCGCTCCAAACTGCCCTCTGTATGTCCAGATCCTTAAACCCGAAAACAAATTCCATGTTAAATTTGCAG
Seq A exon
ATCACGTTGTGTGTGAGGAAGAGTTTAAATACGCCATGTTGGCTCTGAACTGTCTGTGTCCGGCCACTTCTACTCTGATCACTTTACTGGTTCACACATCTCGCGGACA
Seq C2 exon
AGAGGGCCAGCAGTCTCCGGAGCAGTGGCAGAGGATGTATGGTCGATGTTCGGGTAATGAGGTCTATCATATCCGCCTGGGTGACAGTATGTTCTTCAGGGAGTACAACAGCAAAAGCTTTACCTATGCTGCCTTTCACGCTCACAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079484_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.089
Domain overlap (PFAM):
C1:
PF0349313=BK_channel_a=PU(8.8=27.0)
A:
PF0349313=BK_channel_a=FE(34.0=100)
C2:
PF0349313=BK_channel_a=FE(45.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCATTCTGAGGGCTTGGG
R:
TGAGCGTGAAAGGCAGCATAG
Band lengths:
246-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]