BtaEX6047091 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018975 | KCNT1
Description
potassium channel, sodium activated subfamily T, member 1 [Source:HGNC Symbol;Acc:HGNC:18865]
Coordinates
chr11:103420419-103421964:+
Coord C1 exon
chr11:103420419-103420527
Coord A exon
chr11:103420935-103421043
Coord C2 exon
chr11:103421815-103421964
Length
109 bp
Sequences
Splice sites
3' ss Seq
CCTGACCTTCCTGCCCGCAGAGC
3' ss Score
11.59
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
GACCACCAGACCATACTGCGTGCCTGGGCCGTGAAGGACTTTGCCCCAAACTGCCCCCTCTACGTCCAGATCCTCAAGCCTGAGAACAAGTTTCATGTCAAGTTTGCAG
Seq A exon
AGCACGTGGTGTGCGAGGAGGAGTGCAAGTATGCCATGCTGGCCCTCAACTGCATCTGCCCAGCCACGTCCACCCTCATCACCCTGCTGGTGCACACGTCCCGCGGCCA
Seq C2 exon
GGAAGGCCAGGACTCGCCAGAGCAGTGGCAGCGCATGTACGGACGCTGCTCGGGCAACGAGGTCTACCACGTGCGGATGGGGGACAGCAAGTTCTTCCGCGAGTACGAGGGCAAGAGCTTCACCTACGCCGCCTTCCACGCGCACAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018975-'25-20,'25-18,26-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.078
Domain overlap (PFAM):
C1:
PF0349313=BK_channel_a=PU(9.4=27.0)
A:
PF0349313=BK_channel_a=FE(34.0=100)
C2:
PF0349313=BK_channel_a=FE(47.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCACCAGACCATACTGCGT
R:
GAAGGCGGCGTAGGTGAAG
Band lengths:
245-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]