DreEX0005330 @ danRer10
Exon Skipping
Gene
ENSDARG00000104868 | KCNT1 (2 of 2)
Description
potassium channel, sodium activated subfamily T, member 1 [Source:HGNC Symbol;Acc:HGNC:18865]
Coordinates
chr5:64852147-64857226:+
Coord C1 exon
chr5:64852147-64852255
Coord A exon
chr5:64855689-64855797
Coord C2 exon
chr5:64857077-64857226
Length
109 bp
Sequences
Splice sites
3' ss Seq
AGGTATGTTTTGTTTGCTAGATC
3' ss Score
6.99
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GATCATCAGACCATTCTGCGAGCCTGGGCTGTGAAGGATTTTGCTCCAAACTGTCCTCTTTATGTCCAGATCCTCAAACCCGAGAACAAATTTCATGTCAAATTTGCAG
Seq A exon
ATCACGTGGTGTGTGAAGAGGAGTTCAAGTACGCCATGCTGGCCCTGAACTGTGTGTGTCCCGCCACCTCCACACTGGTCACCTTGTTGGTGCACACGTCTCGAGGACA
Seq C2 exon
AGAAGGTCAGACGTCTCCAGAACAGTGGCAGAGGACTTACGGTCGCTGCTCGGGGAATGAAGTTTATCACATCCGTTTGATGGACAGCAAGTTTTTTGGAGAATATGATGGGAAGAGTTTCACTTATGCCTCCTTCCACGCACACAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104868_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.197
Domain overlap (PFAM):
C1:
PF0349313=BK_channel_a=PU(9.4=27.0)
A:
PF0349313=BK_channel_a=FE(34.0=100)
C2:
PF0349313=BK_channel_a=FE(47.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACCATTCTGCGAGCCTG
R:
TTCTTGTGTGCGTGGAAGGAG
Band lengths:
253-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]