RnoEX0046227 @ rn6
Exon Skipping
Gene
ENSRNOG00000017283 | Kcnt1
Description
potassium sodium-activated channel subfamily T member 1 [Source:RGD Symbol;Acc:621106]
Coordinates
chr3:3348397-3349373:+
Coord C1 exon
chr3:3348397-3348505
Coord A exon
chr3:3348904-3349012
Coord C2 exon
chr3:3349224-3349373
Length
109 bp
Sequences
Splice sites
3' ss Seq
TGACCCTGCAGTTCCCACAGACC
3' ss Score
4.43
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
GATCACCAGACCATCCTTCGAGCCTGGGCTGTGAAAGACTTTGCCCCCAACTGCCCCCTCTATGTCCAGATTCTCAAGCCCGAAAACAAGTTTCACGTCAAATTTGCTG
Seq A exon
ACCATGTGGTGTGCGAGGAAGAGTGCAAGTACGCCATGCTGGCCCTGAACTGCATCTGCCCGGCCACCTCCACCCTCATCACCCTGCTGGTGCACACATCCCGTGGCCA
Seq C2 exon
GGAAGGACAGGAGTCACCAGAGCAGTGGCAGCGCATGTACGGGCGCTGCTCGGGCAACGAGGTGTACCACATTCGCATGGGTGACAGTAAATTCTTCCGGGAGTATGAGGGCAAGAGCTTCACCTACGCAGCCTTCCACGCGCACAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017283_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.098
Domain overlap (PFAM):
C1:
PF0349313=BK_channel_a=PU(9.4=27.0)
A:
PF0349313=BK_channel_a=FE(34.0=100)
C2:
PF0349313=BK_channel_a=FE(47.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCAGACCATCCTTCGAGC
R:
GGAAGGCTGCGTAGGTGAAG
Band lengths:
244-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]