GgaEX1056935 @ galGal3
Exon Skipping
Gene
ENSGALG00000001645 | KCNT1
Description
NA
Coordinates
chr17:8916855-8918057:-
Coord C1 exon
chr17:8917949-8918057
Coord A exon
chr17:8917602-8917710
Coord C2 exon
chr17:8916855-8917004
Length
109 bp
Sequences
Splice sites
3' ss Seq
GCAGCTCTGCTTCCTTGCAGATC
3' ss Score
9.13
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
GACCACCAGACCATCCTGAGAGCCTGGGCCGTGAAAGATTTTGCCCCAAACTGCCCTCTCTATGTGCAGATCCTGAAGCCAGAGAACAAGTTTCACGTCAAGTTTGCTG
Seq A exon
ATCACGTCGTCTGTGAGGAGGAGTGCAAGTACGCCATGCTGGCGCTCAACTGTGTCTGCCCCGCCACCTCCACGCTCATCACGCTGCTGGTGCACACCTCCCGTGGGCA
Seq C2 exon
GGAGGGCCAGGAGTCCCCGGAGCAGTGGCAGAGGATGTACGGGCGCTGCTCGGGCAATGAGGTCTACCACATCCGCATGGGTGACAGCAAGTTCTTCATGGAGTACGAGGGGAAGAGCTTCACCTACGCCGCCTTCCATGCGCACAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001645-'16-17,'16-16,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.118
Domain overlap (PFAM):
C1:
PF0349313=BK_channel_a=PU(9.4=27.0)
A:
PF0349313=BK_channel_a=FE(34.0=100)
C2:
PF0349313=BK_channel_a=FE(47.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACCAGACCATCCTGAGAG
R:
TTCTTGTGCGCATGGAAGGC
Band lengths:
258-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]