GgaEX1056935 @ galGal4
Exon Skipping
Gene
ENSGALG00000001645 | Segment
Description
Potassium channel subfamily T member 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8QFV0]
Coordinates
chr17:8221527-8222729:-
Coord C1 exon
chr17:8222621-8222729
Coord A exon
chr17:8222274-8222382
Coord C2 exon
chr17:8221527-8221676
Length
109 bp
Sequences
Splice sites
3' ss Seq
GCAGCTCTGCTTCCTTGCAGATC
3' ss Score
9.13
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
GACCACCAGACCATCCTGAGAGCCTGGGCCGTGAAAGATTTTGCCCCAAACTGCCCTCTCTATGTGCAGATCCTGAAGCCAGAGAACAAGTTTCACGTCAAGTTTGCTG
Seq A exon
ATCACGTCGTCTGTGAGGAGGAGTGCAAGTACGCCATGCTGGCGCTCAACTGTGTCTGCCCCGCCACCTCCACGCTCATCACGCTGCTGGTGCACACCTCCCGTGGGCA
Seq C2 exon
GGAGGGCCAGGAGTCCCCGGAGCAGTGGCAGAGGATGTACGGGCGCTGCTCGGGCAATGAGGTCTACCACATCCGCATGGGTGACAGCAAGTTCTTCATGGAGTACGAGGGGAAGAGCTTCACCTACGCCGCCTTCCATGCGCACAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001645-'16-19,'16-18,17-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.118
Domain overlap (PFAM):
C1:
PF0349313=BK_channel_a=PU(9.4=27.0)
A:
PF0349313=BK_channel_a=FE(34.0=100)
C2:
PF0349313=BK_channel_a=FE(47.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACCAGACCATCCTGAGAG
R:
TTCTTGTGCGCATGGAAGGC
Band lengths:
258-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]