MmuEX0025179 @ mm10
Exon Skipping
Gene
ENSMUSG00000052726 | Kcnt2
Description
potassium channel, subfamily T, member 2 [Source:MGI Symbol;Acc:MGI:3036273]
Coordinates
chr1:140450196-140507849:+
Coord C1 exon
chr1:140450196-140450304
Coord A exon
chr1:140484125-140484233
Coord C2 exon
chr1:140507700-140507849
Length
109 bp
Sequences
Splice sites
3' ss Seq
ACCTATTTTATTTCAAACAGATC
3' ss Score
9.18
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
Exon sequences
Seq C1 exon
GATCACCAAACAATCTTGAGAGCATGGGCTGTGAAAGATTTTGCCCCAAATTGTCCTCTGTATGTTCAGATATTAAAACCAGAAAACAAATTCCACATCAAATTTGCAG
Seq A exon
ATCATGTTGTTTGTGAAGAAGAGTTTAAGTACGCCATGTTAGCTTTAAACTGTATATGCCCAGCAACATCTACACTCATTACACTACTGGTTCATACCTCTAGAGGGCA
Seq C2 exon
AGAAGGGCAGCAGTCACCTGAACAGTGGCAGAAGACTTACGGGAGGTGCTCAGGAAACGAAGTCTATCACATCGTTTTGGAAGAAAGTACATTTTTTGCTGAATATGAAGGGAAGAGTTTTACCTATGCTTCTTTTCATGCCCACAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052726_MULTIEX4-3/4=1-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.137
Domain overlap (PFAM):
C1:
PF0349313=BK_channel_a=PU(18.2=27.0)
A:
PF0349313=BK_channel_a=FE(65.5=100)
C2:
PF0349313=BK_channel_a=FE(47.2=100)
Main Skipping Isoform:
ENSMUST00000120796fB11815
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAATCTTGAGAGCATGGGC
R:
TTGTGGGCATGAAAAGAAGCA
Band lengths:
248-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types