GgaEX6043519 @ galGal4
Exon Skipping
Gene
ENSGALG00000002451 | KCNT2
Description
potassium channel, sodium activated subfamily T, member 2 [Source:HGNC Symbol;Acc:HGNC:18866]
Coordinates
chr8:2757820-2762030:+
Coord C1 exon
chr8:2757820-2757928
Coord A exon
chr8:2760426-2760534
Coord C2 exon
chr8:2761974-2762030
Length
109 bp
Sequences
Splice sites
3' ss Seq
TATATTGTTTTTTTCCACAGATC
3' ss Score
11.82
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GATCATCAAACCATTTTAAGAGCATGGGCTGTTAAAGACTTTGCCCCAAATTGTCCTTTGTATGTCCAAATACTGAAACCTGAGAATAAATTCCACATCAAGTTTGCAG
Seq A exon
ATCATGTTGTGTGTGAAGAAGAATTCAAATATGCTATGCTAGCTCTAAACTGTATATGTCCAGCTACCTCTACATTAATCACACTGCTGGTTCATACCTCCAGGGGACA
Seq C2 exon
AACGGCACCATGGGAAGCTTTTCGACAACTCACTGGAACCAAGCAGACTCTGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002451-'21-25,'21-23,22-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.150
Domain overlap (PFAM):
C1:
PF0349313=BK_channel_a=PU(8.0=27.0)
A:
PF0349313=BK_channel_a=FE(28.8=100)
C2:
PF0349313=BK_channel_a=FE(15.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAAACCATTTTAAGAGCATGGGC
R:
CTGTTCAGAGTCTGCTTGGTTCC
Band lengths:
162-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]