RnoEX0046244 @ rn6
Exon Skipping
Gene
ENSRNOG00000013312 | Kcnt2
Description
potassium sodium-activated channel subfamily T member 2 [Source:RGD Symbol;Acc:735074]
Coordinates
chr13:57343826-57403624:+
Coord C1 exon
chr13:57343826-57343934
Coord A exon
chr13:57380035-57380143
Coord C2 exon
chr13:57403475-57403624
Length
109 bp
Sequences
Splice sites
3' ss Seq
ACCTATTTTATTTCAAACAGATC
3' ss Score
9.18
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
Exon sequences
Seq C1 exon
GATCACCAGACAATTTTGAGAGCATGGGCTGTAAAAGATTTTGCCCCAAATTGTCCTCTGTATGTTCAGATATTAAAACCAGAAAATAAATTCCACATCAAATTTGCAG
Seq A exon
ATCATGTTGTTTGTGAAGAAGAGTTTAAGTACGCCATGTTAGCTTTAAACTGTATATGCCCAGCAACATCTACACTTATTACACTACTGGTTCATACCTCTAGAGGGCA
Seq C2 exon
AGAAGGGCAGCAGTCACCTGAACAGTGGCAGAAGACGTATGGGAGGTGCTCAGGAAATGAAGTCTACCACATCGTTCTGGAAGAAAGTACATTTTTTGCTGAATATGAAGGGAAGAGTTTTACCTATGCTTCTTTCCATGCACACAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013312_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.064
Domain overlap (PFAM):
C1:
PF0349313=BK_channel_a=PU(8.8=27.0)
A:
PF0349313=BK_channel_a=FE(31.9=100)
C2:
PF0349313=BK_channel_a=FE(47.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACAATTTTGAGAGCATGGGC
R:
TTGTGTGCATGGAAAGAAGCA
Band lengths:
250-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]