BtaEX0021193 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019075 | MAP1D
Description
Bos taurus methionyl aminopeptidase type 1D (mitochondrial) (METAP1D), mRNA. [Source:RefSeq mRNA;Acc:NM_001046342]
Coordinates
chr2:24512078-24521992:-
Coord C1 exon
chr2:24521829-24521992
Coord A exon
chr2:24513628-24513675
Coord C2 exon
chr2:24512078-24512519
Length
48 bp
Sequences
Splice sites
3' ss Seq
CTTGTATTTTTGTCTTACAGCGA
3' ss Score
10.22
5' ss Seq
TAGGTTAGT
5' ss Score
5.5
Exon sequences
Seq C1 exon
GTTTACTACAATGGCTACCATGGAGACACCTCAGAAACATTTTTGGTGGGCAATGTGGATGAATGTGGTAAAAAGTTAGTGGAGGTTGCCAGGAGGTGTAGAGATGAAGCAATTGCGGCTTGCAGAGCGGGGGCTCCCTTCTCTGTCATTGGAAACACAATCAG
Seq A exon
CGAATGACAGCAATCTACTCATGGAGGAAGGCATGGCGTTCACCATAG
Seq C2 exon
GTCTGCCCAATTCGAGCACACTGTTCTCATCACGTCGAGGGGCGCGCAGATCCTGACCAAACTGCCCTACGAGGCCTGAGGAGCAATACGAAGGTCGCAAGAGACCCGGGGCCCTTTTTCTTAAATTGCTGAAATCCACCTGGAGAACTTTTAGAAGAAATTGGCTAACGACAGGTCCCAGAGTAACCTACCTAGCACCTAGCAGCGCCGGCTAGGGAAAATGCGGTAGGACTTGGGAGCCGTTCTGAACACAAATCTGAAGCCCCGAAGTGGCCCTGTGCATTCGGAGAGACGGATCCTGGCGCGTCTGTTTCCCAACGCGGGAAACGCATCTGGAAAGGAATGGGGACGCCCTCATTTGGAAGACTAATAAGTCTTAGACATGCATACTTTTTTCTTTCCCTAGCCTTGACTCTGCCCGAATAGAAAGCTTTCACCCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019075_MULTIEX1-2/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0055719=Peptidase_M24=FE(23.7=100)
A:
PF0055719=Peptidase_M24=FE(7.0=100)
C2:
PF0055719=Peptidase_M24=PD(5.3=44.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGCCAGGAGGTGTAGAGA
R:
GGGCAGTTTGGTCAGGATCTG
Band lengths:
148-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development