RnoEX0053959 @ rn6
Exon Skipping
Gene
ENSRNOG00000061587 | Metap1d
Description
methionyl aminopeptidase type 1D (mitochondrial) [Source:RGD Symbol;Acc:1307413]
Coordinates
chr3:58157925-58160313:+
Coord C1 exon
chr3:58157925-58158022
Coord A exon
chr3:58159287-58159334
Coord C2 exon
chr3:58160235-58160313
Length
48 bp
Sequences
Splice sites
3' ss Seq
TTCCTGTGTTTGCTTTGCAGCAA
3' ss Score
10.49
5' ss Seq
TTGGTAAAT
5' ss Score
4.94
Exon sequences
Seq C1 exon
CCACATAACTCGTCAGAATGGTTTGCAAGTCTGTCCACATTTTGTGGGACACGGGATAGGATCGTACTTTCATGGACATCCTGAAATTTGGCATCATG
Seq A exon
CAAATGACAACGATCTGCCCATGGAGGAGCGCATGGCTTTCACCATTG
Seq C2 exon
AGCCAATCATCACTGAAGGTTCCCCGGAATTTAAAGTCCTGGAGGACGCGTGGACCGTGGTCTCACTAGACAACCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061587_MULTIEX2-3/3=2-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.176 C2=0.000
Domain overlap (PFAM):
C1:
PF0055719=Peptidase_M24=FE(14.5=100)
A:
PF0055719=Peptidase_M24=FE(7.0=100)
C2:
PF0055719=Peptidase_M24=FE(11.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAGTCTGTCCACATTTTGT
R:
GTCTAGTGAGACCACGGTCCA
Band lengths:
146-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]