MmuEX0028689 @ mm9
Exon Skipping
Gene
ENSMUSG00000041921 | Metap1d
Description
methionyl aminopeptidase type 1D (mitochondrial) [Source:MGI Symbol;Acc:MGI:1913809]
Coordinates
chr2:71360590-71362852:+
Coord C1 exon
chr2:71360590-71360687
Coord A exon
chr2:71361859-71361906
Coord C2 exon
chr2:71362774-71362852
Length
48 bp
Sequences
Splice sites
3' ss Seq
TTCCTATGTTTGCTTTGCAGCAA
3' ss Score
9.97
5' ss Seq
TAGGTAACT
5' ss Score
6.43
Exon sequences
Seq C1 exon
CCGCATAACTCATCAGAATGGTTTGCAAGTCTGTCCACATTTTGTGGGACATGGGATAGGATCATACTTTCATGGACACCCAGAAATTTGGCATCATG
Seq A exon
CAAATGACAATGATCTGCCCATGGAGGAGGGCATGGCTTTCACCATAG
Seq C2 exon
AGCCAATCATCACTGAAGGTTCCCCAGAATTTAAAGTCCTTGAGGACGCATGGACCGTGGTCTCCCTAGACAACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041921-'16-25,'16-23,18-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.556 C2=0.037
Domain overlap (PFAM):
C1:
PF0055719=Peptidase_M24=FE(14.5=100)
A:
PF0055719=Peptidase_M24=FE(7.0=100)
C2:
PF0055719=Peptidase_M24=FE(11.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTTGCAAGTCTGTCCACA
R:
GGTCCATGCGTCCTCAAGGA
Band lengths:
136-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: