GgaEX0014057 @ galGal3
Exon Skipping
Gene
ENSGALG00000009513 | F1P5C7_CHICK
Description
NA
Coordinates
chr7:19248504-19249903:-
Coord C1 exon
chr7:19249806-19249903
Coord A exon
chr7:19249358-19249405
Coord C2 exon
chr7:19248504-19248582
Length
48 bp
Sequences
Splice sites
3' ss Seq
GTTTTTATTTTCTTTTCTAGCCA
3' ss Score
9.85
5' ss Seq
TAGGTTAGT
5' ss Score
5.5
Exon sequences
Seq C1 exon
CTCTGTGGCGCAGAGGGGCGGCTTCCAGGTGTGCCCCTTCTTTGTCGGCCACGGCATCGGGTCGTACTTCCACGGGCACCCCGAGGTGTGGCACCACG
Seq A exon
CCAATGACAGTGATTTGTTAATGGAGGAGGGAATGGCGTTCACAATAG
Seq C2 exon
AGCCAATAATAATGGAGGGCTCCCCCGAATTTAAGATTCTGAAGGACAAATGGACCGCAATTTCGGTAGACAATAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009513-'7-10,'7-9,8-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0055719=Peptidase_M24=FE(14.5=100)
A:
PF0055719=Peptidase_M24=FE(7.0=100)
C2:
PF0055719=Peptidase_M24=FE(11.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTGTGCCCCTTCTTTGTC
R:
TGCGGTCCATTTGTCCTTCAG
Band lengths:
132-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]