GgaEX0014057 @ galGal4
Exon Skipping
Gene
ENSGALG00000009513 | METAP1D
Description
methionyl aminopeptidase type 1D (mitochondrial) [Source:HGNC Symbol;Acc:HGNC:32583]
Coordinates
chr7:17342360-17343759:-
Coord C1 exon
chr7:17343662-17343759
Coord A exon
chr7:17343214-17343261
Coord C2 exon
chr7:17342360-17342438
Length
48 bp
Sequences
Splice sites
3' ss Seq
GTTTTTATTTTCTTTTCTAGCCA
3' ss Score
9.85
5' ss Seq
TAGGTTAGT
5' ss Score
5.5
Exon sequences
Seq C1 exon
CTCTGTGGCGCAGAGGGGCGGCTTCCAGGTGTGCCCCTTCTTTGTCGGCCACGGCATCGGGTCGTACTTCCACGGGCACCCCGAGGTGTGGCACCACG
Seq A exon
CCAATGACAGTGATTTGTTAATGGAGGAGGGAATGGCGTTCACAATAG
Seq C2 exon
AGCCAATAATAATGGAGGGCTCCCCCGAATTTAAGATTCTGAAGGACAAATGGACCGCAATTTCGGTAGACAATAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009513_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0055719=Peptidase_M24=FE(14.5=100)
A:
PF0055719=Peptidase_M24=FE(7.0=100)
C2:
PF0055719=Peptidase_M24=FE(11.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTGTGCCCCTTCTTTGTC
R:
TGCGGTCCATTTGTCCTTCAG
Band lengths:
132-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]