HsaEX6016724 @ hg19
Exon Skipping
Gene
ENSG00000172878 | AC015976.3
Description
methionyl aminopeptidase type 1D (mitochondrial) [Source:HGNC Symbol;Acc:32583]
Coordinates
chr2:172942525-172944934:+
Coord C1 exon
chr2:172942525-172942622
Coord A exon
chr2:172943943-172943990
Coord C2 exon
chr2:172944856-172944934
Length
48 bp
Sequences
Splice sites
3' ss Seq
CCATGTTTTTTGTTTTGCAGCAA
3' ss Score
9.63
5' ss Seq
TAGGTAAAT
5' ss Score
6.62
Exon sequences
Seq C1 exon
CCACATAACTCATCAGAATGGTTTTCAAGTCTGTCCACATTTTGTGGGACATGGAATAGGATCTTACTTTCATGGACATCCAGAAATTTGGCATCATG
Seq A exon
CAAACGACAGTGATCTACCCATGGAGGAGGGCATGGCATTCACTATAG
Seq C2 exon
AGCCAATCATCACGGAGGGATCCCCTGAATTTAAAGTCCTGGAGGATGCATGGACTGTGGTCTCCCTAGACAATCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172878-'17-17,'17-16,18-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.095 C2=0.000
Domain overlap (PFAM):
C1:
PF0055719=Peptidase_M24=FE(14.5=100)
A:
PF0055719=Peptidase_M24=FE(7.0=100)
C2:
PF0055719=Peptidase_M24=FE(11.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTTTCAAGTCTGTCCACA
R:
AGACCACAGTCCATGCATCCT
Band lengths:
143-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)