DreEX0046068 @ danRer10
Exon Skipping
Gene
ENSDARG00000019715 | metap1d
Description
methionyl aminopeptidase type 1D (mitochondrial) [Source:ZFIN;Acc:ZDB-GENE-050522-71]
Coordinates
chr1:30161026-30162679:+
Coord C1 exon
chr1:30161026-30161123
Coord A exon
chr1:30162454-30162501
Coord C2 exon
chr1:30162601-30162679
Length
48 bp
Sequences
Splice sites
3' ss Seq
TCTTATTTTCTTTTTTTCAGCTA
3' ss Score
10.69
5' ss Seq
TAGGTCTGT
5' ss Score
3.44
Exon sequences
Seq C1 exon
CAATATAGCAAACTCAAATGGATTTCGTGTATGTCCATATTTTATTGGCCATGGGATCGGAGAATATTTCCATGGACATCCAGAGATATGGCATCATG
Seq A exon
CTAATGACAATGACCTCAAGATGGAAGAAGGCATGTCCTTCACCATAG
Seq C2 exon
AACCTATTCTTATGGAGGGAACGTCAGAATTCAGGATCCTGAGTGACAAGTGGACTGCTGTGTCTGTGGACGACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019715-'12-14,'12-13,13-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.118 C2=0.000
Domain overlap (PFAM):
C1:
PF0055719=Peptidase_M24=FE(14.5=100)
A:
PF0055719=Peptidase_M24=FE(7.0=100)
C2:
PF0055719=Peptidase_M24=FE(11.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTGGCCATGGGATCGGAGA
R:
TTTGTCGTCCACAGACACAGC
Band lengths:
133-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]