BtaEX0024892 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019327 | NRAP
Description
nebulin-related anchoring protein [Source:HGNC Symbol;Acc:HGNC:7988]
Coordinates
chr26:34393452-34397901:-
Coord C1 exon
chr26:34397785-34397901
Coord A exon
chr26:34395012-34395116
Coord C2 exon
chr26:34393452-34393559
Length
105 bp
Sequences
Splice sites
3' ss Seq
CTGGTGTTTTGGTTTCCAAGGTG
3' ss Score
7.1
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
ATAAAATACAGGCAGGACTTCAATAAGATGAAGGGCGCTGCACATTATCATTCCCTCCCAGCCCAGGACAACTTGGTTCTGAAGCGGGCTCAGAGCGTGAACAAGCTCGTGAGTGAG
Seq A exon
GTGGAGTATAAGAAGGATCTGGAAAGTAGTAAAGGTCATAGTATCAACTACTGTGAAACGCCTCAATTCAGGAATGTGTGCAAGATTTCAAAATTCACCAGCGAT
Seq C2 exon
AATAAATATAAAGAAAACTACCAGAACCGCATGAGAGGCCGCTATGAAGGAGTCGGGATGGACAAACGGATGCTCCATGCTCTGAAAGTTGGAAGCCTGGCAAGCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019327_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.000 C2=0.250
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=28.2),PF0088013=Nebulin=PU(55.2=41.0)
A:
PF0088013=Nebulin=PD(37.9=31.4)
C2:
PF0088013=Nebulin=PU(55.6=41.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGCAGGACTTCAATAAGATGA
R:
ATTGCTTGCCAGGCTTCCAAC
Band lengths:
218-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development