MmuEX0032291 @ mm9
Exon Skipping
Gene
ENSMUSG00000049134 | Nrap
Description
nebulin-related anchoring protein [Source:MGI Symbol;Acc:MGI:1098765]
Coordinates
chr19:56447297-56452661:-
Coord C1 exon
chr19:56452545-56452661
Coord A exon
chr19:56448854-56448958
Coord C2 exon
chr19:56447297-56447404
Length
105 bp
Sequences
Splice sites
3' ss Seq
CTGGTGTTTGGCATTCCAAGGTG
3' ss Score
5.03
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
ATAAAATACCGGCAGGACTTCCATAAGATGAAAGGTGCAGCGCATTTTCACTCCCTTGCAGCCCAGGACAACTTGGTTCTTAAGCGAGCTCAGAGTGTGAGCAAGCTTGTGAGTGAG
Seq A exon
GTGGAGTACAAGAAGGGTCTGGAGAATAGTAAAGGTCACAGTATCAACTACTGTGAGACACCCCAGTTCAGGAATGTGAGCAAGATCTCAAAATTCACCAGCGAT
Seq C2 exon
AATAAATATAAAGAAAACTATCAGACCCAGCTGAGAGGCCACTATGACGGAGTCGGCATGGACAGACGCATGCTCCACGCTCTCAAAGTTGGCAGCCTGGCTAGCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049134_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=28.2),PF0088013=Nebulin=PU(57.1=41.0)
A:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(57.1=45.7)
C2:
PF0088013=Nebulin=PD(35.7=27.8),PF0088013=Nebulin=PU(55.6=41.7)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAATACCGGCAGGACTTCCA
R:
CTAGCCAGGCTGCCAACTTTG
Band lengths:
219-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: