HsaEX0043742 @ hg19
Exon Skipping
Gene
ENSG00000197893 | NRAP
Description
nebulin-related anchoring protein [Source:HGNC Symbol;Acc:7988]
Coordinates
chr10:115401124-115405700:-
Coord C1 exon
chr10:115405584-115405700
Coord A exon
chr10:115402693-115402797
Coord C2 exon
chr10:115401124-115401231
Length
105 bp
Sequences
Splice sites
3' ss Seq
CTGGTGTTTTGATTTCCAAGGTG
3' ss Score
7.37
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
ATAAAATACAGGCAGGACTTCAATAAGATGAAAGGCGCTGCACATTATCACTCGCTTCCAGCTCAAGACAACTTGGTTCTCAAACAGGCTCAGAGCGTAAACAAACTCGTGAGTGAG
Seq A exon
GTGGAGTATAAGAAGGATCTGGAAAGTAGTAGAGGTCACAGTATCAACTACTGTGAAACACCTCAATTCAGGAACGTGAGCAAGATCTCAAAATTTACCAGTGAT
Seq C2 exon
AATAAATATAAAGAAAACTACCAGAACCACATGAGAGGCCGCTATGAAGGAGTTGGTATGGACAGACGCACTCTGCATGCTATGAAAGTTGGCAGCCTGGCAAGCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197893_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=0.086 C2=0.463
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=28.2),PF0088013=Nebulin=PU(55.2=41.0)
A:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(57.1=45.7)
C2:
PF0088013=Nebulin=PD(35.7=27.8),PF0088013=Nebulin=PU(53.8=38.9)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATACAGGCAGGACTTCAATAAGA
R:
CTTGCCAGGCTGCCAACTTTC
Band lengths:
218-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)