GgaEX6041021 @ galGal3
Exon Skipping
Gene
ENSGALG00000008914 | NRAP
Description
NA
Coordinates
chr6:28945609-28948129:-
Coord C1 exon
chr6:28948013-28948129
Coord A exon
chr6:28946267-28946371
Coord C2 exon
chr6:28945609-28945716
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTTGTATTCTTGTCACCAAGGTG
3' ss Score
4.38
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
ATAAAATACAAGAAAGATCTTTCCAAGATGAAAGGTGCAGCTCACTTTCACTCTCTAACAGCTGAAGACAACCTGGTCCTTAAACAAGCCCAGAGTGCTAACAAGCTTGTTAGTGAG
Seq A exon
GTGGAATACAAGAAGGATCTTGGAAACAACAGAGGCTACAGCGTTAACTACTGTGATACTCCTCAATTCAAGAATGTGAGCAAGATCTCAAAATACACCAGTGAT
Seq C2 exon
ATTAAGTACAAAGAAACGTACCAGAACCAAATGAAAGGCCATTATATGGGTATTGGTATGGACAAGCGAATGTTACATGCCATGAAAGTGGGCAACTTGGCAAGCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008914-'8-8,'8-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.057 C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=28.2),PF0088013=Nebulin=PU(55.2=41.0)
A:
PF0088013=Nebulin=PD(37.9=31.4)
C2:
PF0088013=Nebulin=PU(57.7=41.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCCAAGATGAAAGGTGCAGCT
R:
CTTGCCAAGTTGCCCACTTTC
Band lengths:
202-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]