DreEX0051478 @ danRer10
Exon Skipping
Gene
ENSDARG00000009341 | nrap
Description
nebulin-related anchoring protein [Source:ZFIN;Acc:ZDB-GENE-060616-224]
Coordinates
chr12:30480655-30483789:+
Coord C1 exon
chr12:30480655-30480771
Coord A exon
chr12:30483445-30483549
Coord C2 exon
chr12:30483682-30483789
Length
105 bp
Sequences
Splice sites
3' ss Seq
AATATTCCCCTATCATACAGGTT
3' ss Score
7.76
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
CTGAAATACAAGAAGGATTTCAACAAGATGAAGGGATCTTCTGCATACCACACTCTAACCACCGAAGACAACCTGGCTCTGAAGAGCGCACGCAAAATCAACAAGCTTATGAGCGAG
Seq A exon
GTTGAATACAAGAAGGACCTTGAAACCACCAAAGGCCACAGCATCAACTACTGCGAGACGCCACAGTTCAAGAATGTGTCAAAGATCGCCAAGTATACTAGTGAT
Seq C2 exon
AATAAATATAAAGAGAATTACACCAATCACATGAAGGGTCACTATGAAGGGGGCGGCATCGACAAGAAGACCATGCATGCCATGAATGTCAGAAAGCTTGCCAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009341-'13-17,'13-16,14-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.086 C2=0.500
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=28.2),PF0088013=Nebulin=PU(55.2=41.0)
A:
PF0088013=Nebulin=PD(37.9=31.4)
C2:
PF0088013=Nebulin=PU(53.6=41.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGAAGGATTTCAACAAGATGAA
R:
ATCACTGGCAAGCTTTCTGACA
Band lengths:
218-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]