MmuEX0032291 @ mm10
Exon Skipping
Gene
ENSMUSG00000049134 | Nrap
Description
nebulin-related anchoring protein [Source:MGI Symbol;Acc:MGI:1098765]
Coordinates
chr19:56372807-56378171:-
Coord C1 exon
chr19:56378055-56378171
Coord A exon
chr19:56374364-56374468
Coord C2 exon
chr19:56372807-56372914
Length
105 bp
Sequences
Splice sites
3' ss Seq
CTGGTGTTTGGCATTCCAAGGTG
3' ss Score
5.03
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
ATAAAATACCGGCAGGACTTCCATAAGATGAAAGGTGCAGCGCATTTTCACTCCCTTGCAGCCCAGGACAACTTGGTTCTTAAGCGAGCTCAGAGTGTGAGCAAGCTTGTGAGTGAG
Seq A exon
GTGGAGTACAAGAAGGGTCTGGAGAATAGTAAAGGTCACAGTATCAACTACTGTGAGACACCCCAGTTCAGGAATGTGAGCAAGATCTCAAAATTCACCAGCGAT
Seq C2 exon
AATAAATATAAAGAAAACTATCAGACCCAGCTGAGAGGCCACTATGACGGAGTCGGCATGGACAGACGCATGCTCCACGCTCTCAAAGTTGGCAGCCTGGCTAGCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049134_CASSETTE8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=28.2),PF0088013=Nebulin=PU(57.1=41.0)
A:
PF0088013=Nebulin=PD(41.4=33.3),PF0088013=Nebulin=PU(57.1=44.4)
C2:
PF0088013=Nebulin=PD(35.7=27.8),PF0088013=Nebulin=PU(55.6=41.7)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAATACCGGCAGGACTTCCA
R:
CTAGCCAGGCTGCCAACTTTG
Band lengths:
219-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types