RnoEX0060904 @ rn6
Exon Skipping
Gene
ENSRNOG00000016714 | Nrap
Description
nebulin-related anchoring protein [Source:RGD Symbol;Acc:1306731]
Coordinates
chr1:277161433-277166067:-
Coord C1 exon
chr1:277165951-277166067
Coord A exon
chr1:277162881-277162985
Coord C2 exon
chr1:277161433-277161540
Length
105 bp
Sequences
Splice sites
3' ss Seq
CTGGTGTTTGGCATTTCAAGGTG
3' ss Score
6.68
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
ATAAAGTACAGGCAGGACTTCCATAAGATGAAGGGCGCGGCACATTTTCACTCCCTTGCAGCCCAGGACAACTTGGTTCTCCAGCGGGCTCAGAATGTGAGCAAGCTTGTGAGTGAG
Seq A exon
GTGGAGTACAAGAAGGGTCTGGAGAATAGTAAAGGTCACAGTATCAACTACTGTGAGACACCCCAGTTCAGGAATGTGAGCAAGATCTCAAAATTCACCAGCGAT
Seq C2 exon
AATAAGTATAAAGAAAACTATCAGACTCACCTGAGAGGCCACTATGAAGGAGTCGGCATGGACAGACGCATGCTCCACGCTCTCAAAGTCGGCAGCCTGGCCAGCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016714_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=0.000 C2=0.074
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=28.2),PF0088013=Nebulin=PU(61.5=41.0)
A:
PF0088013=Nebulin=PD(37.9=31.4)
C2:
PF0088013=Nebulin=PD(30.8=22.2),PF0088013=Nebulin=PU(55.6=41.7)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAAAGTACAGGCAGGACTTCCA
R:
GCCAGGCTGCCGACTTTG
Band lengths:
218-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]