BtaEX0026434 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016836 | PDK1
Description
pyruvate dehydrogenase kinase, isozyme 1 [Source:HGNC Symbol;Acc:HGNC:8809]
Coordinates
chr2:24096928-24102030:-
Coord C1 exon
chr2:24101959-24102030
Coord A exon
chr2:24097325-24097509
Coord C2 exon
chr2:24096928-24097023
Length
185 bp
Sequences
Splice sites
3' ss Seq
TGACAGACAGGTTTGTTTAGCTT
3' ss Score
-4.56
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTATATCCAGAGTCTTCAAGAGCTTCTTGAGTTTAAGGACAAAAGTGCTGAAGATGCTAAAACTATTTATGA
Seq A exon
CTTTACAGACACTGTGATACGGATCAGGAACCGACACAATGACGTGATACCCACAATGGCTGAAGGTGTGGTTGAATACAAGGAGAGCTTCGGGGTGGATCCTGTCACCAGCCAGAATGTTCAGTATTTTTTGGATCGTTTCTACATGAGTCGAATTTCAATTAGAATGTTACTTAATCAGCACT
Seq C2 exon
CTTTATTATTTGGTGGAAAAGGCAAAGGAAGCCTATCTCATCGGAAACACGTCGGAAGTATAAATCCCAACTGCAGTGTGGTTGAAGTTATTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016836_MULTIEX2-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.061
Domain overlap (PFAM):
C1:
PF104364=BCDHK_Adom3=FE(14.4=100)
A:
PF104364=BCDHK_Adom3=FE(37.1=100)
C2:
PF104364=BCDHK_Adom3=PD(13.2=66.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGAGTCTTCAAGAGCTTCT
R:
TTTAATAACTTCAACCACACTGCAGT
Band lengths:
162-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development