RnoEX0064561 @ rn6
Exon Skipping
Gene
ENSRNOG00000001517 | Pdk1
Description
pyruvate dehydrogenase kinase 1 [Source:RGD Symbol;Acc:69427]
Coordinates
chr3:58538253-58542107:+
Coord C1 exon
chr3:58538253-58538324
Coord A exon
chr3:58541592-58541776
Coord C2 exon
chr3:58542018-58542107
Length
185 bp
Sequences
Splice sites
3' ss Seq
TGACCGAGAGGCTTGTTTAGATT
3' ss Score
-4.79
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTATATCCAAAGCCTTCAGGAGCTGCTTGACTTTAAGGACAAGAGTGCTGAGGATGCTAAAACTATTTATGA
Seq A exon
ATTCACAGACACAGTGATAAGGATCAGAAACCGGCACAATGATGTCATCCCCACCATGGCCCAGGGTGTGACTGAATACAAGGAGAGCTTCGGGGTGGATCCTGTCACCAGCCAAAATGTTCAGTACTTTTTGGATCGGTTCTACATGAGTCGCATCTCAATTAGAATGCTACTCAACCAGCACT
Seq C2 exon
CTTTATTGTTTGGTGGAAAAGGAAGTCCATCTCATCGAAAACACATTGGAAGCATAAATCCAAACTGTGATGTAGTCGAGGTTATTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001517-'7-8,'7-7,12-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.032
Domain overlap (PFAM):
C1:
PF104364=BCDHK_Adom3=FE(14.5=100)
A:
PF104364=BCDHK_Adom3=FE(37.6=100)
C2:
PF104364=BCDHK_Adom3=PD(12.1=64.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTATATCCAAAGCCTTCAGGAGCT
R:
CTTTAATAACCTCGACTACATCACAG
Band lengths:
162-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]