GgaEX1042831 @ galGal3
Exon Skipping
Gene
ENSGALG00000013235 | PDK1
Description
NA
Coordinates
chr7:19080047-19081245:-
Coord C1 exon
chr7:19081174-19081245
Coord A exon
chr7:19080382-19080566
Coord C2 exon
chr7:19080047-19080136
Length
185 bp
Sequences
Splice sites
3' ss Seq
TAACAATGTATTAATTTTAGTTT
3' ss Score
6.16
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTATGTCCAAAGTCTTCAGGAGATCCTTGACTTTAAAGACAAAAGTTCGGAAGATTCGGGGGCTATTCACAG
Seq A exon
TTTTACAGATACCGTGATAAAAATACGCAATCGACACAACGATGTAATTCCTACTATGGCTCAAGGAGTAATAGAGTACAAGGAAAGCTTTGGCATTGATCCAGTGACCTCACAGAATGTGCAGTATTTTTTAGACCGTTTCTACATGAGTCGCATTTCAATTAGAATGCTCCTTAATCAACACT
Seq C2 exon
CTTTACTGTTTGGTGGGAAAATTAATCCAGCTCATCCTAAACACATTGGAAGCATTGATCCTAGCTGCAATGTTGTTGGAGTTATTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013235-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF104364=BCDHK_Adom3=FE(14.5=100)
A:
PF104364=BCDHK_Adom3=FE(37.6=100)
C2:
PF104364=BCDHK_Adom3=PD(12.1=64.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTATGTCCAAAGTCTTCAGGAGATCC
R:
CTCTAATAACTCCAACAACATTGCA
Band lengths:
162-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]