MmuEX6102135 @ mm10
Exon Skipping
Gene
ENSMUSG00000006494 | Pdk1
Description
pyruvate dehydrogenase kinase, isoenzyme 1 [Source:MGI Symbol;Acc:MGI:1926119]
Coordinates
chr2:71880039-71883932:+
Coord C1 exon
chr2:71880039-71880110
Coord A exon
chr2:71883423-71883607
Coord C2 exon
chr2:71883843-71883932
Length
185 bp
Sequences
Splice sites
3' ss Seq
TGACCGAGAGGTTTGTTTAGATT
3' ss Score
-4.62
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTATATCCAAAGCCTTCAGGAGTTGCTTGATTTTAAAGACAAAAGTGCTGAAGATGCTAAAACTATTTATGA
Seq A exon
ATTCACAGACACAGTGATAAGGATCAGAAACCGGCACAATGATGTCATTCCCACCATGGCCCAGGGTGTGACTGAATACAAGGAGAGCTTCGGGGTGGATCCTGTCACCAGCCAAAATGTTCAGTACTTTTTGGATCGATTCTACATGAGTCGCATCTCAATTAGAATGCTACTCAACCAGCACT
Seq C2 exon
CCTTATTGTTCGGTGGAAAAGGAAGTCCATCTCATCGAAAGCACATTGGAAGCATAAATCCAAACTGCGACGTGGTGGAGGTCATTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006494_MULTIEX4-2/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.030 C2=0.022
Domain overlap (PFAM):
C1:
PF104364=BCDHK_Adom3=FE(14.5=100)
A:
PF104364=BCDHK_Adom3=FE(37.6=100)
C2:
PF104364=BCDHK_Adom3=PD(12.1=64.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTATATCCAAAGCCTTCAGGAGT
R:
CTTTAATGACCTCCACCACGTCG
Band lengths:
162-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types