DreEX0054430 @ danRer10
Exon Skipping
Gene
ENSDARG00000013128 | pdk1
Description
pyruvate dehydrogenase kinase, isozyme 1 [Source:ZFIN;Acc:ZDB-GENE-091204-402]
Coordinates
chr9:3134435-3140381:-
Coord C1 exon
chr9:3140310-3140381
Coord A exon
chr9:3137400-3137584
Coord C2 exon
chr9:3134435-3134530
Length
185 bp
Sequences
Splice sites
3' ss Seq
ACAAACCTCTGTTGTTTTAGTTT
3' ss Score
7.2
5' ss Seq
ACAGTGAGA
5' ss Score
3.45
Exon sequences
Seq C1 exon
GTACATGCAAAGTTTTCAGGATATACTGGAATTCAAGGACAAGGATGCTGACGATGAAACAGTCAATCATGA
Seq A exon
TTTCACAGATGCTGTGATTAAGATCAGAAACCGCCACAATGATGTGGTGCCCACCATGGCTCAGGGTGTTGTGGAATACAAGGAGACCTACGGCACTGACCCCATCACCAGTCAGAATATGCAGTACTTTCTGGACCGTTTCTACATGAGCAGGATTTCAATCAGAATGCTCCTGAACCAGCACA
Seq C2 exon
CTCTTCTGTTCGGAGGAAAGGTGAGGGACAATCCTGCTCATCCCAAACAGATCGGCAGCATTGACCCCAGCTGTCGGGTCACGGATGTGGTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013128-'2-3,'2-2,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.152
Domain overlap (PFAM):
C1:
PF104364=BCDHK_Adom3=FE(14.4=100)
A:
PF104364=BCDHK_Adom3=FE(37.1=100)
C2:
PF104364=BCDHK_Adom3=PD(13.2=66.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAAGTTTTCAGGATATACTGGA
R:
TTTTACCACATCCGTGACCCG
Band lengths:
162-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]