BtaEX0026730 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000675 | PGS1
Description
Bos taurus phosphatidylglycerophosphate synthase 1 (PGS1), mRNA. [Source:RefSeq mRNA;Acc:NM_001046395]
Coordinates
chr19:54422443-54426933:-
Coord C1 exon
chr19:54426744-54426933
Coord A exon
chr19:54425932-54426110
Coord C2 exon
chr19:54422443-54422964
Length
179 bp
Sequences
Splice sites
3' ss Seq
TGCCGCTTTCCTCCTTGTAGTGC
3' ss Score
9.23
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
GAAGGAAGAACTCGCGCACCATGCTGCTCCCGCTCCTGCAGAGGTTTCCGGAACAGGTCCGCGTCTCGCTGTTCCACACACCCAACCTCCGCGGGCTCCTGCGGCTCCTCATCCCCGAGCGCTTCAACGAGACCATTGGCCTGCAGCACATCAAGGTGTACCTCTTCGACAACAACGTCATCCTCAGCGG
Seq A exon
TGCAAACCTGAGTGACTCCTACTTCACCAACCGGCAGGACCGCTACGTGTTCTTGCAGGACTGTCCCGAGATCGCCGACTTCTTCACGGAGCTGGTGGACGCAGTAGGGGACGTGTCCCTGCAGCTGCAGGGGGACGACACTGTGCAGATGGTCGAGGGGATGGTGCACCCTTACAAAG
Seq C2 exon
GTGACCGGGCTGCGTATTGCAGGGCAGCCAATAAGAGGGTCATGGACGTGATCAACTCCGCCAGGATGCGCCAGCAGATGCTGCACGCCCAGACCTTCCACAGCGACCCCCTCCTGACCCAGGAGGACGCCGCAGCTGCTGGAGACCGGAGGCCGGCCCCCGACACCTGGATCTACCCCCTGATCCAGATGAAGCCCTTTGAGATTCAGATCGATGAGATTGTCACCGAGACCCTGCTGACAGAGGCCGAGCGAGGGGCTAAGGTCTATCTCACCACTGGCTACTTCAACCTGACCCAGGCCTACATGGACCTGGTCTTGGGCACGCGGGCCGAGTACCAGATCCTGCTGGCCTCGCCGGAGGTGAACGGCTTCTTCGGGGCCAAGGGGGTGGCGGGCGCCATCCCGGCCGCCTACGTGCACATCGAGCGGCAGTTCTACAGTGAGGTGTGCAGCCTGGGGCAGCAGGAGCGGGTGCAGCTGCAGGAATACTGGCGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000675-'18-11,'18-8,20-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.034
Domain overlap (PFAM):
C1:
PF130911=PLDc_2=FE(39.1=100)
A:
PF130911=PLDc_2=PD(22.4=59.0)
C2:
PF130911=PLDc_2=PU(67.1=65.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAACGAGACCATTGGCCTG
R:
GGATCAGGGGGTAGATCCAGG
Band lengths:
254-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development