RnoEX0065189 @ rn6
Exon Skipping
Gene
ENSRNOG00000002949 | Pgs1
Description
phosphatidylglycerophosphate synthase 1 [Source:RGD Symbol;Acc:1305052]
Coordinates
chr10:107010495-107013267:+
Coord C1 exon
chr10:107010495-107010684
Coord A exon
chr10:107011080-107011258
Coord C2 exon
chr10:107012746-107013267
Length
179 bp
Sequences
Splice sites
3' ss Seq
CTGATTCTTCTTCTTTCTAGTGC
3' ss Score
8.73
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GTAGGAAGAACTCTCGCACTATGCTGCTCCCACTCCTGCAGAGGTTTCCAGAGCACGTGCGCGTTTCCCTCTTCCATACGCCAAACCTCCGAGGACTCCTCCGACTCCTTATCCCTGAGCGCTTCAATGAGACCATCGGCCTCCAGCACATCAAGGTGTACCTCTTTGACAACAACGTCATCTTGAGTGG
Seq A exon
TGCAAACCTGAGTGACTCGTACTTCACCAACCGCCAGGACCGCTATGTGTTCTTGCAAGACTGCGCTGAGATCGCAGACTTCTTCACGGAGCTGGTGGATGCTGTGGGGGATGTGTCCTTGCAGTTGCAGGGTGATGACACAGTGGAGGTGGTGGATGGGATGGTGCACCCTTACAAAG
Seq C2 exon
GTGACCGGGCTGCGTACTGCAGAGCAGCTAACAAACGGGTCATGGACGTTATTCACTCAGCCAGGACCCGACAGCAGATGCTGCATGCACAGACCTTTCACAGTGACTCCCTGCTGAGCCAGGAAGAGGCTGCAGCTGCTGGTGATCGCAGACCAGCACCGGACACCTGGATTTACCCACTGATCCAGATGAAGCCCTTTGAGATTCAGATAGATGAGATAGTCACTGAGACCCTGCTGACGGAAGCTGAGCGGGGAGCTAAGGTCTTCCTCACCACTGGCTACTTCAACCTGACACAGGCCTACATGGACCTGGTGCTAGGCACTCGAGCCGAGTATCAGATCCTTCTAGCCTCACCAGAGGTGAACGGCTTCTTTGGGGCTAAGGGTGTGGCCGGCGCCATCCCAGCTGCCTATGTGCACATTGAGCGACAGTTCTACAGTGAAGTGTGCAGCCTGGGGCAACAGGATCGGGTCCAGCTCCAGGAATACTGGCGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002949-'17-10,'17-8,18-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.017
Domain overlap (PFAM):
C1:
PF130911=PLDc_2=FE(39.4=100)
A:
PF130911=PLDc_2=PD(21.9=57.4)
C2:
PF130911=PLDc_2=PU(67.1=65.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTTCCCTCTTCCATACGCC
R:
TCAGCAGGGAGTCACTGTGAA
Band lengths:
246-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]