DreEX0006696 @ danRer10
Exon Skipping
Gene
ENSDARG00000075857 | PGS1
Description
phosphatidylglycerophosphate synthase 1 [Source:HGNC Symbol;Acc:HGNC:30029]
Coordinates
chr12:34118360-34133424:-
Coord C1 exon
chr12:34133235-34133424
Coord A exon
chr12:34127588-34127766
Coord C2 exon
chr12:34118360-34118775
Length
179 bp
Sequences
Splice sites
3' ss Seq
TATGATATCATCTCATACAGGGC
3' ss Score
7.02
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
Exon sequences
Seq C1 exon
GTAAGCACAATTCCCGCACAATGTTACTGCCGCTCCTCCAGCGTTTCCCCGAGCAGATGAGAGTGTCGCTGTACCACACGCCAGACCTGCGAGGACTCCTGCGGCTCCTGGTACCTGAACGCTTCAATGAAACCATCGGCGTGCAGCACATCAAGGCATACCTTTTTGACAACAGTCTCATCATTAGTGG
Seq A exon
GGCCAATCTGAGCGACTCCTACTTCACCAATCGGCAGGATCGTTATGTTCTTCTGGAGGACTGCAAGGAAGTTGCTGATTTCTTTGCTGAACTGGTTGGAGCCGTGGGTGACGTGTCAATGCAGCTCCTGCCTGACAACAGTGTGGAGATGATGGAGGGAAGGGTGCATCCTTACAAAG
Seq C2 exon
GCAACAGAGCAGATTTTTCAGAATCGGCCCAGAGACGGATCATGGAGGTGGTGAACACTGCCCGCATCCGACAAAGCATGCTAAAAACGGAATGCTCCGACCATCCAGACTCAAACGGGACATCGCCAAACGACACCTGGATCTTTCCCTTGGTGCAAATGAAACCTCTAGGCATCCATCTAGATGAACAAGTGACCAAACGACTGCTTACAGAGGCTGGTGGAGATGCTGTGGTTTACCTGACGTCGGGCTACTTCAACCTGACACGCACATACATGCAGCTGGTTTTAGGCGCAGAGGCAGACTATCGTATTCTTATGGCCTCTCCTGAGGTTAATGGGTTTTTTGGAGCCAAAGGAGTAGCTGGGGCAATTCCAGAGGCCTACGTTCACCTCGCCCGGCAGTTCTACAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075857-'7-11,'7-7,8-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.016 C2=0.094
Domain overlap (PFAM):
C1:
PF130911=PLDc_2=FE(40.1=100)
A:
PF130911=PLDc_2=PD(21.0=54.1)
C2:
PF130911=PLDc_2=PU(46.7=51.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAGTGTCGCTGTACCACA
R:
CGTTTGAGTCTGGATGGTCGG
Band lengths:
250-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]