GgaEX1043256 @ galGal3
Exon Skipping
Gene
ENSGALG00000007181 | PGPS1_CHICK
Description
NA
Coordinates
chr18:9777612-9779295:-
Coord C1 exon
chr18:9779106-9779295
Coord A exon
chr18:9778590-9778768
Coord C2 exon
chr18:9777612-9778145
Length
179 bp
Sequences
Splice sites
3' ss Seq
ACTTTTCTTTTCTCTCCTAGTGC
3' ss Score
10.41
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GAAGGAAGAATTCTCGAACAATGCTAATTCCACTGCTGCAGAGATTCCCCGAACAAGTGCGTGTCTCCCTTTTCCACACCCCAAACCTGCGTGGGCTTCTCAAACTCCTGATTCCAGAGCGTTTTAATGAGACCATTGGCCTGCAGCACATCAAGGTCTATCTCTTTGATGATAATGTCATCCTGAGCGG
Seq A exon
TGCAAACCTGAGTGATTTGTACTTCACCAATCGTCAGGACCGCTATGTTCTCCTGCAGGACTCTCCTGAGATTGCAGACTTCTTCACGGAGCTAGTGGATGCAATTGGAGATGTGTCTCTGCAGCTACAGCAAGATGATACAGTCCAGATGATGGAGGGGATGGTACACCCCTACCAAG
Seq C2 exon
GAGATAAGGTGAGATACTGTGAGATAGCAAATCAAAGAGTGATGGAAGTAATCGACTCTGCCAGGACACGACAAGAACTCCTTCATGCAAAGACTTTCCACAGCAGCCAGCAAGGCAGCTCCATGTTACCCCAGCATGACTCTGAAGCATCTGAGGGTCTGAAACCAGAACCTGACACGTGGATCTATCCCTTAATCCAAATGAAACCTTTTGGGATTCAAATAGATGAGATGGTCACAGAGACATTGCTGACAGAGGCTGAACGAGATGCCAAGATATACCTCACCACGGGCTACTTCAACCTGACACAAGCTTACATGGACCTCATTCTGGGCACTAGGGCAGAATATCGGATTCTTCTGGCCTCACCAGAGGTGAATGGCTTTTTTGGTGCCAAAGGGGTGGCAGGTGCCATCCCTTCTGCCTATGTTTACATAGAACACCAGTTTTACAATGAGGTCTGCTGCCTTCACCAGCAGGAGAGGGTCCAGCTGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007181-'5-7,'5-5,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.033 C2=0.084
Domain overlap (PFAM):
C1:
PF130911=PLDc_2=FE(38.9=100)
A:
PF130911=PLDc_2=PD(22.8=60.7)
C2:
PF130911=PLDc_2=PU(63.9=55.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCTCCCTTTTCCACACCC
R:
TAACATGGAGCTGCCTTGCTG
Band lengths:
258-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]