MmuEX6091582 @ mm10
Exon Skipping
Gene
ENSMUSG00000017715 | Pgs1
Description
phosphatidylglycerophosphate synthase 1 [Source:MGI Symbol;Acc:MGI:1921701]
Coordinates
chr11:118002351-118005891:+
Coord C1 exon
chr11:118002351-118002540
Coord A exon
chr11:118003341-118003519
Coord C2 exon
chr11:118005370-118005891
Length
179 bp
Sequences
Splice sites
3' ss Seq
TGATTTTTTTTTCTTTTTAGTGC
3' ss Score
10.36
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GTAGGAAGAACTCTCGCACTATGCTGCTCCCACTCCTGCAGAGGTTTCCAGAGCGCGTGCGCGTCTCCCTCTTCCACACACCAAACCTCCGAGGACTCCTCCGACTCCTTATCCCTGAGCGCTTCAATGAGACCATCGGCCTCCAGCACATCAAGGTGTACCTCTTTGACAACAACGTCATCCTGAGTGG
Seq A exon
TGCAAACCTGAGTGACTCATACTTCACCAACCGCCAGGACCGCTACGTGTTCTTGCAGGACTGCGCTGAGATTGCCGACTTCTTCACAGAGCTGGTGGACGCCGTGGGGGATGTATCCTTGCAGTTGCAGGGCGACGACACAGTGGAGGTTGTGGATGGGATGGTGCACCCTTACAAAG
Seq C2 exon
GTGACCGGGCTGCGTACTGCAGAGCAGCGAACAAGCGGGTCATGGACGTCATCCACTCGGCCAGGGCCCGGCAGCAGATGCTGCACGCACAGACCTTTCACAGTGATTCTCTGCTGAGCCAGGAAGAGGCTGCAGCTGCCGGGGACCGGAGGCCAGCGCCCGACACCTGGATTTACCCACTGATCCAGATGAAGCCCTTTGAGATTCAGATTGATGAGATAGTCACGGAGACGCTGCTGACGGAGGCTGAGCGCGGAGCTAAGGTCTTCCTCACCACTGGCTACTTCAACCTGACCCAGGCCTACATGGACCTGGTGCTAGGCACTCGAGCTGAGTATCAGATCCTTCTAGCCTCACCGGAGGTGAATGGCTTCTTTGGGGCTAAGGGCGTGGCGGGCGCCATCCCAGCCGCCTATGTGCACATTGAGCGACAGTTCTACAGTGAGGTGTGTAGCCTGGGGCAGCAGGATCGGGTCCAGCTCCAGGAATACTGGCGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000017715-'19-20,'19-11,21-20=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.017
Domain overlap (PFAM):
C1:
PF130911=PLDc_2=FE(39.4=100)
A:
PF130911=PLDc_2=PD(21.9=58.3)
C2:
PF130911=PLDc_2=PU(67.1=65.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCTTCCACACACCAAACC
R:
TCCTGGCTCAGCAGAGAATCA
Band lengths:
248-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types