GgaEX1043256 @ galGal4
Exon Skipping
Gene
ENSGALG00000007181 | PGS1
Description
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q5ZHN9]
Coordinates
chr18:10106368-10108051:-
Coord C1 exon
chr18:10107862-10108051
Coord A exon
chr18:10107346-10107524
Coord C2 exon
chr18:10106368-10106901
Length
179 bp
Sequences
Splice sites
3' ss Seq
ACTTTTCTTTTCTCTCCTAGTGC
3' ss Score
10.41
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GAAGGAAGAATTCTCGAACAATGCTAATTCCACTGCTGCAGAGATTCCCCGAACAAGTGCGTGTCTCCCTTTTCCACACCCCAAACCTGCGTGGGCTTCTCAAACTCCTGATTCCAGAGCGTTTTAATGAGACCATTGGCCTGCAGCACATCAAGGTCTATCTCTTTGATGATAATGTCATCCTGAGCGG
Seq A exon
TGCAAACCTGAGTGATTTGTACTTCACCAATCGTCAGGACCGCTATGTTCTCCTGCAGGACTCTCCTGAGATTGCAGACTTCTTCACGGAGCTAGTGGATGCAATTGGAGATGTGTCTCTGCAGCTACAGCAAGATGATACAGTCCAGATGATGGAGGGGATGGTACACCCCTACCAAG
Seq C2 exon
GAGATAAGGTGAGATACTGTGAGATAGCAAATCAAAGAGTGATGGAAGTAATCGACTCTGCCAGGACACGACAAGAACTCCTTCATGCAAAGACTTTCCACAGCAGCCAGCAAGGCAGCTCCATGTTACCCCAGCATGACTCTGAAGCATCTGAGGGTCTGAAACCAGAACCTGACACGTGGATCTATCCCTTAATCCAAATGAAACCTTTTGGGATTCAAATAGATGAGATGGTCACAGAGACATTGCTGACAGAGGCTGAACGAGATGCCAAGATATACCTCACCACGGGCTACTTCAACCTGACACAAGCTTACATGGACCTCATTCTGGGCACTAGGGCAGAATATCGGATTCTTCTGGCCTCACCAGAGGTGAATGGCTTTTTTGGTGCCAAAGGGGTGGCAGGTGCCATCCCTTCTGCCTATGTTTACATAGAACACCAGTTTTACAATGAGGTCTGCTGCCTTCACCAGCAGGAGAGGGTCCAGCTGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007181-'11-12,'11-10,13-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.033 C2=0.084
Domain overlap (PFAM):
C1:
PF130911=PLDc_2=FE(38.9=100)
A:
PF130911=PLDc_2=PD(22.8=60.7)
C2:
PF130911=PLDc_2=PU(63.9=55.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCTCCCTTTTCCACACCC
R:
TAACATGGAGCTGCCTTGCTG
Band lengths:
258-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]