BtaEX0026764 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001634 | PHF1
Description
PHD finger protein 1 [Source:HGNC Symbol;Acc:HGNC:8919]
Coordinates
chr23:7531132-7531784:+
Coord C1 exon
chr23:7531132-7531280
Coord A exon
chr23:7531443-7531538
Coord C2 exon
chr23:7531716-7531784
Length
96 bp
Sequences
Splice sites
3' ss Seq
CTGGTCCCGTTTCCCTTCAGGTG
3' ss Score
12.22
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AGGGGGGGTGCGCTGAAGAAGGGCCCCTATGCCCGGGCCATGCTGGGCATGAAGCTCTCCCTGCCGTATGGACTGAAGGGGTTGGACTGGGACGCTGGGCATCTGAGCAACCGGCAGCAGAGCTACTGTTACTGTGGTGGCCCTGGGGA
Seq A exon
GTGGAACCTGAAGATGCTGCAGTGCCGGAGCTGCCTGCAGTGGTTCCATGAGGCCTGCACCCAGTGTCTGAGCAAGCCCCTCCTTTACGGGGACAG
Seq C2 exon
GTTCTATGAGTTTGAGTGCTGTGTGTGTCGGGGGGGCCCTGAGAAGGTCCGGAGGCTACAGCTTCGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001634_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062824=PHD=PU(14.5=16.0)
A:
PF0062824=PHD=FE(58.2=100)
C2:
PF0062824=PHD=PD(25.5=58.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGAAGAAGGGCCCCTAT
R:
CCGACACACACAGCACTCAAA
Band lengths:
170-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development