RnoEX0065278 @ rn6
Exon Skipping
Gene
ENSRNOG00000000480 | Phf1
Description
PHD finger protein 1 [Source:RGD Symbol;Acc:1303205]
Coordinates
chr20:5529126-5529708:+
Coord C1 exon
chr20:5529126-5529274
Coord A exon
chr20:5529416-5529511
Coord C2 exon
chr20:5529640-5529708
Length
96 bp
Sequences
Splice sites
3' ss Seq
GGCGCTGTCTTCCCCTTGAGGTG
3' ss Score
2.7
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
AGGGGAGGTGCCCTGAAGAAGGGTCCCTATGCCCGGGCCATGCTGGGCATGAAACTCTCCCTGCCGTACGGTCTGAAAGGGCTGGACTGGGACGCCGGACATCTGAGCAACAGGCAGCAGAGCTACTGTTACTGCGGGGGCCCGGGGGA
Seq A exon
GTGGAACCTGAAAATGCTGCAATGCCGGAGCTGCCTCCAGTGGTTCCATGAGGCCTGCACCCAGTGTCTGAGCAAGCCCCTCCTTTACGGAGACAG
Seq C2 exon
ATTCTATGAATTTGAATGCTGTGTGTGCCGGGGCGGCCCTGAGAAAGTACGGAGGTTACAGCTTCGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000480-'8-16,'8-14,9-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062824=PHD=PU(14.5=16.0)
A:
PF0062824=PHD=FE(58.2=100)
C2:
PF0062824=PHD=PD(25.5=58.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGAAGGGTCCCTATGCCC
R:
CCGGCACACACAGCATTCAAA
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]