DreEX6042701 @ danRer10
Exon Skipping
Gene
ENSDARG00000057439 | phf1
Description
PHD finger protein 1 [Source:ZFIN;Acc:ZDB-GENE-100922-277]
Coordinates
chr16:45467165-45469963:+
Coord C1 exon
chr16:45467165-45467313
Coord A exon
chr16:45469716-45469811
Coord C2 exon
chr16:45469895-45469963
Length
96 bp
Sequences
Splice sites
3' ss Seq
TATAACGTGTGTGTTTTAAGGTG
3' ss Score
9.28
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
Exon sequences
Seq C1 exon
AGAGGAGGAGCGTTGAAAAGAGGACGTTTCGCTCGGCTCATGCAGATCATGAAAGTACGCTTGCCCTATCAGCTCTCATCTCTGGACTGGGACCCTCAGCACTTGACCAACCAGCAGCAGTGTTACTGCTATTGTGCTGGGCCTGGAGA
Seq A exon
GTGGAATCTAAAGATGCTGCAGTGTGGCAGTTGTGGACAGTGGTTTCATGAAGCCTGCACTCAGTGCCTGAGCAAACCTCTTCTGTATGGAGATCG
Seq C2 exon
CTTTTATCAGTTCCAGTGCTCCGTCTGCAGCAATGGAGCAGAGAGCGTCCAGAGGCTTCCCATGACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057439-'6-10,'6-9,7-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062824=PHD=PU(15.1=16.0)
A:
PF0062824=PHD=FE(60.4=100)
C2:
PF0062824=PHD=PD(22.6=50.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCGTTGAAAAGAGGACGT
R:
AGACGGAGCACTGGAACTGAT
Band lengths:
169-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]