BtaEX0028912 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006716 | PTGS1
Description
Bos taurus prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) (PTGS1), mRNA. [Source:RefSeq mRNA;Acc:NM_001105323]
Coordinates
chr11:93234274-93245045:+
Coord C1 exon
chr11:93234274-93234560
Coord A exon
chr11:93242173-93242320
Coord C2 exon
chr11:93243920-93245045
Length
148 bp
Sequences
Splice sites
3' ss Seq
CTGTATTTATCTCTTGGCAGATC
3' ss Score
9.8
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GGGAGACCATCAAGATTGTGATAGAGGAGTATGTGCAGCAGCTGAGCGGCTACTTCCTGCAGCTCAAGTTCGACCCAGAGCTGCTGTTTGGGGCCCAATTCCAGTACCGCAACCGCATCGCCATGGAGTTCAACCAGCTTTACCACTGGCACCCGCTCATGCCCGACTCCTTCCGGGTGGGCCCCCAGGACTACAGCTACGAGCAGTTTCTGTTCAACACCTCCATGCTGGTGGACTACGGGGTCGAGGCCCTGGTGGACGCCTTTTCTCGCCAGCCTGCAGGCCGG
Seq A exon
ATCGGTGGGGGTAGGAACATAGACCACCACATCCTGCACGTGGCCGTGGATGTCATCAAGGAATCGCGGGAGCTGAGGCTGCAGCCTTTCAATGAGTACCGCAAGAGGTTTGGCATGAAGCCCTACACCTCTTTCCAGGAGCTCACAG
Seq C2 exon
GGGAGAAGGAGATGGCAGCTGAGTTGGAGGAGCTGTATGGAGACATCGATGCTTTGGAATTCTACCCGGGGCTACTTCTTGAGAAGTGCCATCCGAACTCCATCTTTGGGGAGAGTATGATAGAAATGGGGGCTCCTTTTTCCCTTAAGGGCCTCTTAGGGAACCCCATCTGTTCTCCAGAGTACTGGAAGGCAAGCACATTTGGTGGTGATGTGGGCTTCAACCTTGTCAAGACGGCCACGCTGAAGAAGCTGGTTTGCCTCAACACCAAGACTTGTCCCTACGTCTCCTTCCATGTGCCAGACCCCCATCGGGAGGACAGGCCTGGGGTGGAGCGGCCACCCACAGAGCTCTGAAGGGGCCAGGCAGCAGCATTCTGGATGGTAGAGCTTCCTGCTTGCTGTTCCAGAATGCCGAGGGGTGGATTGTCTTTGATGTTGGGTTTCTGATTTGGCGTCGACAGTATCAGTGTGGACATTTAGAAATCTAGGTCTCTTACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006716_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.127
Domain overlap (PFAM):
C1:
PF0309810=An_peroxidase=FE(21.5=100)
A:
PF0309810=An_peroxidase=FE(11.1=100)
C2:
PF0309810=An_peroxidase=PD(22.4=83.2)
Main Skipping Isoform:
ENSBTAT00000008833fB5575
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCGCCATGGAGTTCAACCA
R:
CCCCGGGTAGAATTCCAAAGC
Band lengths:
243-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development