MmuEX6100887 @ mm9

Exon Skipping

Gene

ENSMUSG00000047250 | Ptgs1

Description

prostaglandin-endoperoxide synthase 1 [Source:MGI Symbol;Acc:MGI:97797]

Coordinates

chr2:36100564-36107792:+

Coord C1 exon

chr2:36100564-36100850

Coord A exon

chr2:36104616-36104763

Coord C2 exon

chr2:36106516-36107792

Length

148 bp

Sequences

Splice sites

3' ss Seq

AGCATGCTAATCTCTTACAGATT

3' ss Score

6.99

5' ss Seq

CAGGTAGGT

5' ss Score

10.28

Exon sequences

Seq C1 exon

GAGAAACCATCAAAATTGTCATTGAGGAGTATGTGCAGCACTTGAGTGGCTATTTCCTGCAGCTCAAGTTTGACCCGGAGCTGCTGTTCCGAGCCCAGTTCCAATATCGAAACCGCATCGCCATGGAATTTAACCATCTCTATCACTGGCATCCACTCATGCCCAACTCCTTCCAAGTGGGCTCACAAGAGTACAGCTACGAGCAGTTTTTATTTAACACTTCTATGCTGGTGGACTATGGGGTTGAGGCACTGGTGGATGCCTTCTCTCGCCAGAGGGCTGGCCGG

Seq A exon

ATTGGTGGAGGTAGGAACTTTGACTATCATGTTCTGCATGTGGCTGTGGATGTCATCAAGGAGTCCCGAGAGATGCGCCTACAGCCCTTCAATGAATACCGAAAGAGGTTTGGCTTGAAGCCTTACACCTCTTTCCAGGAGCTCACAG

Seq C2 exon

GAGAGAAGGAGATGGCTGCTGAGTTGGAGGAGCTGTACGGTGACATCGATGCTTTAGAGTTCTACCCGGGGTTGCTGCTGGAGAAGTGCCAGCCCAACTCCATCTTTGGAGAAAGTATGATAGAGATGGGGGCTCCCTTTTCCCTCAAGGGCCTCCTAGGGAATCCCATCTGTTCCCCAGAGTACTGGAAACCCAGCACGTTCGGTGGTGACGTGGGCTTCAACCTTGTCAACACAGCCTCACTGAAGAAACTGGTCTGCCTCAACACCAAGACCTGCCCCTATGTTTCCTTCCGTGTGCCAGATTACCCTGGAGATGACGGGTCTGTCTTAGTGAGACGCTCCACTGAGCTCTGAGGGAGCTGGAAAGCAGCCTCTGGAGGGAGGAGTTTTGTTCCTGATGAAGACAGTCCTTGATGTGGGTTTTCGTGGCTTGGCATTGTGAGAGCTGATGCTCACATTTGAAACTTTGGGTCTTACCCTTGCCTAGAATATTGTGAT

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000047250-'14-16,'14-15,15-16=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (No Ref, Alt. Stop)

No structure available

Features