MmuEX6100887 @ mm10
Exon Skipping
Gene
ENSMUSG00000047250 | Ptgs1
Description
prostaglandin-endoperoxide synthase 1 [Source:MGI Symbol;Acc:MGI:97797]
Coordinates
chr2:36245044-36252272:+
Coord C1 exon
chr2:36245044-36245330
Coord A exon
chr2:36249096-36249243
Coord C2 exon
chr2:36250996-36252272
Length
148 bp
Sequences
Splice sites
3' ss Seq
AGCATGCTAATCTCTTACAGATT
3' ss Score
6.99
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GAGAAACCATCAAAATTGTCATTGAGGAGTATGTGCAGCACTTGAGTGGCTATTTCCTGCAGCTCAAGTTTGACCCGGAGCTGCTGTTCCGAGCCCAGTTCCAATATCGAAACCGCATCGCCATGGAATTTAACCATCTCTATCACTGGCATCCACTCATGCCCAACTCCTTCCAAGTGGGCTCACAAGAGTACAGCTACGAGCAGTTTTTATTTAACACTTCTATGCTGGTGGACTATGGGGTTGAGGCACTGGTGGATGCCTTCTCTCGCCAGAGGGCTGGCCGG
Seq A exon
ATTGGTGGAGGTAGGAACTTTGACTATCATGTTCTGCATGTGGCTGTGGATGTCATCAAGGAGTCCCGAGAGATGCGCCTACAGCCCTTCAATGAATACCGAAAGAGGTTTGGCTTGAAGCCTTACACCTCTTTCCAGGAGCTCACAG
Seq C2 exon
GAGAGAAGGAGATGGCTGCTGAGTTGGAGGAGCTGTACGGTGACATCGATGCTTTAGAGTTCTACCCGGGGTTGCTGCTGGAGAAGTGCCAGCCCAACTCCATCTTTGGAGAAAGTATGATAGAGATGGGGGCTCCCTTTTCCCTCAAGGGCCTCCTAGGGAATCCCATCTGTTCCCCAGAGTACTGGAAACCCAGCACGTTCGGTGGTGACGTGGGCTTCAACCTTGTCAACACAGCCTCACTGAAGAAACTGGTCTGCCTCAACACCAAGACCTGCCCCTATGTTTCCTTCCGTGTGCCAGATTACCCTGGAGATGACGGGTCTGTCTTAGTGAGACGCTCCACTGAGCTCTGAGGGAGCTGGAAAGCAGCCTCTGGAGGGAGGAGTTTTGTTCCTGATGAAGACAGTCCTTGATGTGGGTTTTCGTGGCTTGGCATTGTGAGAGCTGATGCTCACATTTGAAACTTTGGGTCTTACCCTTGCCTAGAATATTGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047250-'27-29,'27-27,28-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0309810=An_peroxidase=FE(25.8=100)
A:
PF0309810=An_peroxidase=FE(13.3=100)
C2:
PF0309810=An_peroxidase=PD(26.9=83.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGCAGCTCAAGTTTGACC
R:
ACTCAGCAGCCATCTCCTTCT
Band lengths:
257-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types