GgaEX1046890 @ galGal3
Exon Skipping
Gene
ENSGALG00000001314 | PTGS1
Description
NA
Coordinates
chr17:9477094-9478461:+
Coord C1 exon
chr17:9477094-9477380
Coord A exon
chr17:9477867-9478014
Coord C2 exon
chr17:9478094-9478461
Length
148 bp
Sequences
Splice sites
3' ss Seq
CTCATCCTCTCCTCCTGCAGATC
3' ss Score
12.69
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
GGGAGACCATCAAGATCGTCATTGAGGACTACGTCCAGCACCTCAGTGGGTACTTCTTGAACCTCAAGTTCGACCCTGAGCTGCTGTTCGAGCAGCAGTTCCAGTACCGGAATCGCATTGCGGTGGAGTTCAACCAGCTCTACCACTGGCACGCGCTGATGCCCGACTCCTTCACCATCCAGGGACAGGAGTACAGCTACGAGCAGTTCCTCTACAACACCTCCATGCTCATGGACTATGGCGTGGAGGCCCTGGCGGAGTCCTTTTCCATGCAGACTGCAGGAAGG
Seq A exon
ATCGGTGGGGGGCAAAACATTAATGCCAACGTACTGGGAGTGGCTGTTGGAGTCATTGAGGAGTCGAGGCAGCTGAGGCTGCAGCCCTTCAATGAGTACCGGAAGAGGTTTGGCCTGAAGCCCTACACGTCCTTCCAGGAGCTCACAG
Seq C2 exon
GAGAGGAGGACAAGGCAGCAGAGCTGGAGGAGCTGTATGGAGACATCGACGCTCTGGAGTTTTATCCAGGATTGCTGCTTGAGAAACCCCAACCCAACGGCATCTTTGGGGAAAGCATGGTGGAGATTGGCGCTCCATTTTCACTGAAGGGACTTCTTGGGAACCCCATCTGCTCCCCAGAGTACTGGAAGCCCAGTACCTTTGGTGGAGCAACCGGCTTCGAGATCGTCAAGACAGCATCCCTGGAGAAACTCGTGTGCCTCAACGTGAAGAAGTGTCCGTACGTGGCGTTCCATGTGCCGGATGCTGCAGCAGCAGGTGAGACTGACAGCGGCCATGCAGGTGGAGCATCATCCACAGAGCTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001314-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.072
Domain overlap (PFAM):
C1:
PF0309810=An_peroxidase=FE(21.5=100)
A:
PF0309810=An_peroxidase=FE(11.1=100)
C2:
PF0309810=An_peroxidase=PD(22.0=90.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTCCAGTACCGGAATCGC
R:
GCGTCGATGTCTCCATACAGC
Band lengths:
244-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]