DreEX0059249 @ danRer10
Exon Skipping
Gene
ENSDARG00000052148 | ptgs1
Description
prostaglandin-endoperoxide synthase 1 [Source:ZFIN;Acc:ZDB-GENE-020530-1]
Coordinates
chr5:64255311-64265272:+
Coord C1 exon
chr5:64255311-64255597
Coord A exon
chr5:64259963-64260110
Coord C2 exon
chr5:64264763-64265272
Length
148 bp
Sequences
Splice sites
3' ss Seq
TTGTCTTTTTAATGACACAGATC
3' ss Score
6.85
5' ss Seq
CAGGTATAA
5' ss Score
7.46
Exon sequences
Seq C1 exon
GTGAGACCATTCGTATCGTAATCGAAGAGTATGTGCAGCATCTGAGCGGCTACCGGCTGAAGCTGCACTTTGACCCCACGCTGCTCTTCAACTCACAGTTCCAGTACCAGAACCGCATTGCAGTGGAGTTCAATCAACTTTACCACTGGCACCCGCTCATGCCTGACAGCTTCTACATCGACGGAGACCACATTCAGTACTCAAAGTTCATATTCAACACATCGATCCTCACACATTATGGCTTGGAGAAGCTGGTGGAGGCCTTCTCAATACAACCCGCAGGACAG
Seq A exon
ATCGGAGGGGGTCATAACATTCACCCAGTGGTGTCCGGAGTTGCTGAGAGGGTCATCGTTGAATCGAGGGAGCTTCGACTTCAGCCGTTCAATGAATATCGCAAGAGATTCAATCTGAAACCCTACACATCCTTCGCAGAATTGACAG
Seq C2 exon
GAGAGCAGGAAATGTCTAAAGAGCTGGAGGAACTATACGGACATATTGATGCTATGGAGTTCTACCCAGCTCTTCTGCTAGAGAAAACACGACCTGGTGCGGTATTTGGTGAAAGCATGGTGGAAATGGGGGCCCCTTTTTCCCTAAAAGGCCTCATGGGAAATCCTATCTGCTCCCCAGACTACTGGAAGCCCAGCACATTTGGAGGCAAGACAGGCTTCGATATAGTAAACTCTGCTACTTTAAAGAAACTGGTGTGCCTTAATACGAAATGGTGCCCGTATGTGTCTTTCCACACTCCCCCATCAGATTATAAACCACAGAGGACATCTCACGGCGAACTTTAGCAAAACGTCTGTCTGGAATCCCGCTGAAAACACTGAACACAAATAAATAAGAAATTCAAAAGCGCAAACAAGTTGTTTGTAGCAAGGTGATTGAAGTGTATATTTTTGTAAGAGGTTACACTTTATTTTAAGTCACATTAAATACTGTGTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052148_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.096
Domain overlap (PFAM):
C1:
PF0309810=An_peroxidase=FE(25.9=100)
A:
PF0309810=An_peroxidase=FE(13.4=100)
C2:
PF0309810=An_peroxidase=PD(26.7=84.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTCTCAATACAACCCGCA
R:
AGCCTGTCTTGCCTCCAAATG
Band lengths:
246-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]