RnoEX0070997 @ rn6
Exon Skipping
Gene
ENSRNOG00000007415 | Ptgs1
Description
prostaglandin-endoperoxide synthase 1 [Source:RGD Symbol;Acc:3439]
Coordinates
chr3:15574568-15582344:+
Coord C1 exon
chr3:15574568-15574854
Coord A exon
chr3:15579095-15579242
Coord C2 exon
chr3:15581065-15582344
Length
148 bp
Sequences
Splice sites
3' ss Seq
GGCATGCTAATCTCTTGCAGATT
3' ss Score
7.64
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GGGAAACCATCAAGATTATCATCGAGGAGTACGTACAGCACTTGAGTGGCTATTTCCTGCAGCTCAAGTTTGACCCGGAGCTGCTGTTCCGAGCCCAGTTCCAGTATCGCAACCGCATCGCCTTGGAATTCAACCACCTCTATCACTGGCATCCGCTCATGCCTGATTCCTTCCAAGTGGGCTCACAAGAGTACAGCTATGAGCAGTTTTTATTTAACACATCTATGCTGGTGGACTACGGTGTCGAGGCACTGGTGGATGCCTTCTCTCGCCAGAGGGCTGGCCGG
Seq A exon
ATTGGTGGGGGTAGGAACTTTGACTACCATGTTCTGCATGTGGCCGAGGATGTCATCAAGGAGTCCCGAGAAATGCGCCTGCAGTCCTTCAATGAATACCGAAAGAGGTTTGGCCTGAAGCCTTACACTTCTTTCCAGGAGTTCACAG
Seq C2 exon
GAGAGAAGGAGATGGCCGCTGAGTTGGAGGAGCTATATGGTGACATCGATGCTTTAGAGTTCTACCCGGGGCTGATGCTGGAGAAGTGCCAGCCCAACTCCCTCTTTGGGGAGAGCATGATAGAGATGGGGGCTCCTTTCTCCCTCAAGGGCCTCCTAGGGAATCCCATCTGTTCCCCAGAGTACTGGAAACCCAGCACATTCGGTGGTGATGTGGGTTTCAACATCGTTAACACAGCCTCACTGAAGAAACTGGTCTGCCTCAACACCAAGACCTGCCCCTATGTCTCCTTCCGTGTGCCAGATTACCCTGGAGATGACGGGTCTGTCTTCGTGAGACCGTCCACTGAGCTCTGAGGGGGCTCTTCTGGAGGGAGGAGTTTTGTTCCTGAAGAAGACAGTCCTTGATGTGGGTTTCCTGGCTGGGCATTGTGAGAGCTGACATTGACATTTGGAACTTGGGGTCTCACCCTTGCCTAGAATATTGTGATTTTATTTTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007415-'18-19,'18-18,20-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0309810=An_peroxidase=FE(25.8=100)
A:
PF0309810=An_peroxidase=FE(13.3=100)
C2:
PF0309810=An_peroxidase=PD(26.9=83.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGCTCACAAGAGTACAGC
R:
GAGAAAGGAGCCCCCATCTCT
Band lengths:
253-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]