GgaEX1046890 @ galGal4
Exon Skipping
Gene
ENSGALG00000001314 | PTGS1
Description
prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) [Source:HGNC Symbol;Acc:HGNC:9604]
Coordinates
chr17:8768555-8769922:+
Coord C1 exon
chr17:8768555-8768841
Coord A exon
chr17:8769328-8769475
Coord C2 exon
chr17:8769555-8769922
Length
148 bp
Sequences
Splice sites
3' ss Seq
CTCATCCTCTCCTCCTGCAGATC
3' ss Score
12.69
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
GGGAGACCATCAAGATCGTCATTGAGGACTACGTCCAGCACCTCAGTGGGTACTTCTTGAACCTCAAGTTCGACCCTGAGCTGCTGTTCGAGCAGCAGTTCCAGTACCGGAATCGCATTGCGGTGGAGTTCAACCAGCTCTACCACTGGCACGCGCTGATGCCCGACTCCTTCACCATCCAGGGACAGGAGTACAGCTACGAGCAGTTCCTCTACAACACCTCCATGCTCATGGACTATGGCGTGGAGGCCCTGGCGGAGTCCTTTTCCATGCAGACTGCAGGAAGG
Seq A exon
ATCGGTGGGGGGCAAAACATTAATGCCAACGTACTGGGAGTGGCTGTTGGAGTCATTGAGGAGTCGAGGCAGCTGAGGCTGCAGCCCTTCAATGAGTACCGGAAGAGGTTTGGCCTGAAGCCCTACACGTCCTTCCAGGAGCTCACAG
Seq C2 exon
GAGAGGAGGACAAGGCAGCAGAGCTGGAGGAGCTGTATGGAGACATCGACGCTCTGGAGTTTTATCCAGGATTGCTGCTTGAGAAACCCCAACCCAACGGCATCTTTGGGGAAAGCATGGTGGAGATTGGCGCTCCATTTTCACTGAAGGGACTTCTTGGGAACCCCATCTGCTCCCCAGAGTACTGGAAGCCCAGTACCTTTGGTGGAGCAACCGGCTTCGAGATCGTCAAGACAGCATCCCTGGAGAAACTCGTGTGCCTCAACGTGAAGAAGTGTCCGTACGTGGCGTTCCATGTGCCGGATGCTGCAGCAGCAGGTGAGACTGACAGCGGCCATGCAGGTGGAGCATCATCCACAGAGCTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001314-'8-13,'8-11,9-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.115
Domain overlap (PFAM):
C1:
PF0309810=An_peroxidase=FE(21.5=100)
A:
PF0309810=An_peroxidase=FE(11.1=100)
C2:
PF0309810=An_peroxidase=PD(22.0=78.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTCCAGTACCGGAATCGC
R:
GCGTCGATGTCTCCATACAGC
Band lengths:
244-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]