BtaEX0029689 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020791 | RAPGEF1
Description
Rap guanine nucleotide exchange factor (GEF) 1 [Source:HGNC Symbol;Acc:HGNC:4568]
Coordinates
chr11:101786459-101791829:-
Coord C1 exon
chr11:101791690-101791829
Coord A exon
chr11:101791006-101791119
Coord C2 exon
chr11:101786459-101786637
Length
114 bp
Sequences
Splice sites
3' ss Seq
CCAGGTTTCCTCTCTTCCAGGAG
3' ss Score
9.2
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
ACTCTCAGCGTTCTCATCTCTCCTCCTTCACCATGAAGCTGAAGGACAAATTCCACTCGCCCAAAATCAAGAGGACGCCATCAAAGAAGGGAAAACCAGCCGAGGTGTCTGTGAAGATTCCAGAGAAGCCCGTGAACAAA
Seq A exon
GAGGCAACAGACAGATTTCTACCAGAGGGCTACCCTATCCCCTTGGATCTGGAGCAGCAGGCAGTAGAGTTTATGTCCACCAGTGCTGTGGCTTCCAGGTCTCAAAGGCAGAAG
Seq C2 exon
AACCTGAGCTGGCTGGAGGAGAAAGAGAAGGAAGTTGTCAGTGCCTTGCGCTACTTTAAGACCATTGTGGACAAAATGGCTATTGATAAGAAGGTCCTGGAGATGCTCCCAGGGTCCGCCAGCAAGGTGCTGGAGGCCATCTTACCCCTGGTGCAGAGCGACCCTCGAATTCAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020791_MULTIEX2-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.532 A=0.053 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGACGCCATCAAAGAAGGG
R:
CTGAATTCGAGGGTCGCTCTG
Band lengths:
244-358
Functional annotations
There are 1 annotated functions for this event
PMID: 22749401
Inclusion enhances interaction with GRB2, and reduces with CRK. By LUMIER.
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development