BtaEX0030008 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000023867 | RC3H2
Description
ring finger and CCCH-type domains 2 [Source:HGNC Symbol;Acc:HGNC:21461]
Coordinates
chr11:94013380-94016470:-
Coord C1 exon
chr11:94016037-94016470
Coord A exon
chr11:94015289-94015459
Coord C2 exon
chr11:94013380-94013526
Length
171 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTGTCCCCCCTTAGGAA
3' ss Score
11.79
5' ss Seq
GATGTAAGA
5' ss Score
5.46
Exon sequences
Seq C1 exon
GATACTACCCACCACCTCCAACGGTACCAGCTGGTGTGGCTCCCTGTGTTCCTCGCTTTGTGAGGTCCAATAATGTTCCAGAGTCCTCCCTCCCACCTGCTTCCATGCCATATGCCGATCATTACAGTACATTTTCCCCTCGAGATCGAATGAATTCTTCTCCTTACCAACCTCCTCCTCCGCAGCCGTATGGACCAGTTCCCCCAGTACCTTCTGGAATGTATGCTCCTGTGTACGACAGCAGGCGCATCTGGCGCCCACCTGTGTACCAACGAGATGACATTATTAGAAGCAATTCTTTACCTCCAATGGATGTGATGCACTCGTCAGTGTATCAGACGTCTTTGCGGGAAAGATATAACTCATTAGATGGGTATTATTCAGTGGCTTGTCAGCCACCAAGTGAGCCAAGGACAACTGTGCCTTTACCAAGG
Seq A exon
GAACCTTGTGGTCATTTGAAGACCAGTTGCGAGGAGCAGATAAGAAGAAAGCCAGAGCAGTGGGCACAGTACCACACTCAGAAAGCACCTCTTGTCTCTTCAACTCTTCCTGTGGCAACACAGTCACCAACACCACCTTCTCCTCTATTCAGTGTAGACTTTCGCACTGAT
Seq C2 exon
TTCTCTGAAAATGTGAGTGGCACAAAATTTGAAGATGATCATCTTTCCCATTATTCTCCCTGGTCTTGTGGCACCATCGGTTCTTGTATAAATGCCATTGATTCAGAGCCCAGAGATGTGATTGCTAATTCAAATGCGGTATTAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023867_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.659 A=0.711 C2=0.061
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACCTGTGTACCAACGAGA
R:
TGCCACAAGACCAGGGAGAAT
Band lengths:
251-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development